| Package |
plasma |
| Title |
Partial LeAst Squares for Multiomic Analysis |
| Version |
1.1.4 |
| Date |
2025-04-06Authors@R: c(person("Kevin R.", "Coombes", role = c("cre", "aut"), email = "krc@silicovore.com"), person("Kyoko", "Yamaguchi", role = "aut"), person("Salma", "Abdelbaky", role = "aut")) |
| Description |
Contains tools for supervised analyses of incomplete, overlapping multiomics datasets. Applies partial least squares in multiple steps to find models that predict survival outcomes. See Yamaguchi et al. (2023) <doi:10.1101/2023.03.10.532096>. |
| Depends |
R (>= 3.5.0) |
| Imports |
methods, stats, graphics, survival, pls, plsRcox, Polychrome (>= 1.5.0), viridisLite, beanplot, oompaBase |
| Suggests |
R.rsp, tidyr, ClassDiscovery |
| License |
Apache License (== 2.0) |
| LazyLoad |
yes |
| URL |
http://oompa.r-forge.r-project.org/ |
| VignetteBuilder |
R.rsp |
| NeedsCompilation |
no |
| Packaged |
2025-04-15 14:10:49 UTC; KRC |
| Author |
Kevin R. Coombes [cre, aut], Kyoko Yamaguchi [aut], Salma Abdelbaky [aut] |
| Maintainer |
Kevin R. Coombes <krc@silicovore.com> |
| Built |
R 4.5.0; ; 2025-04-15 14:11:18 UTC; windows |
| User Manual | plasma-manual.pdf |
| R CHECK | 00check.log |
| Vignettes |
interpret.pdf, plasma.pdf |
