OOMPA logo

Overview

OOMPA

Object-Oriented Microarray and Proteomics Analysis

Package List (by Project)

OOMPA

oompaBase
Class Unions, Matrix Operations, and Color Schemes for OOMPA
oompaData
Data to Illustrate OOMPA Algorithms
PreProcess
Basic Functions for Pre-Processing Microarrays
ClassComparison
Classes and Methods for "Class Comparison" Problems on Microarrays
ClassDiscovery
Classes and Methods for "Class Discovery" with Microarrays or Proteomics
TailRank
The Tail-Rank Statistic
Polychrome
Qualitative Palettes with Many Colors
BetaModels
Bayesian Analysis of Different Rates in Different Groups

Class Prediction

BimodalIndex
The Bimodality Index
Modeler
Classes and Methods for Training and Using Binary Prediction Models
CrossValidate
Classes and Methods for Cross Validation of "Class Prediction" with Microarrays or Proteomics
GenAlgo
Classes and Methods to Use Genetic Algorithms for Feature Selection
Classprediction
Classes and Methods for "Class Prediction" with Microarrays or Proteomics

NameNeedle

NameNeedle
Using Needleman-Wunsch to Match Sample Names

SIBER

SIBER
Systematic Identification of Bimodally Expressed Genes Using RNAseq Data

integIRTy

integIRTy
Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory

UMPIRE

UMPIRE
The Ultimate Microrray Prediction, Reality and Inference Engine

Thresher

PCDimension
Finding the Number of Significant Principal Components
Thresher
Threshing and Reaping for Principal Components

SuperCurve

SuperCurveSampleData
'SuperCurve' RPPA Sample Data
SuperCurve
RPPA Analysis Package
tclish
'Tcl/Tk' Utilities Package
SuperCurveGUI
'SuperCurve' GUI Package
SlideDesignerGUI
Slide Designer GUI Package


R-Forge Logo